NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268280_1030813

Scaffold Ga0268280_1030813


Overview

Basic Information
Taxon OID3300028298 Open in IMG/M
Scaffold IDGa0268280_1030813 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1638
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030143Metagenome / Metatranscriptome186Y
F056343Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0268280_10308132F056343AGGAGMPEQITDHQVLSSYLAEEQVNGFTVKPWTIKQLLLVMPILDALVQEFKTQGVTLDNLGEMFESQGLAAAKDIIQTILPRLPEFLAITLRIDREQAEELDLGLGMQLAVKVLRMNIDHLKNAFGLIMSQMGVLIGPEATP
Ga0268280_10308133F030143N/AMVKGLVAASQVRSRHRLMEQGVSMTVAVTGGLDLALNQGKGKVLERWLKEVSGEEKSEPPEEKPKMSDRAFSFFTAMPRQGPGRPAREK

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