NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257126_1003756

Scaffold Ga0257126_1003756


Overview

Basic Information
Taxon OID3300028287 Open in IMG/M
Scaffold IDGa0257126_1003756 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9411
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.04%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F013231Metagenome / Metatranscriptome273Y
F056899Metagenome / Metatranscriptome137N
F063073Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0257126_100375610F056899N/AMSKNTFVRASISGDYGQDLVMKYLKDKGYEVEEAPKKLFYDWDVKGIKNGRTVTIEVKYDSKAYMWAARRGKPEQPNLYIEFRSTTKDADSGILKSKADFYFYILKTGDKDIAFVFDRVQFLQHLQMANYKVVGNGATGDDNAQGWIPPLHEILVSRYGYKATIDLTEYA
Ga0257126_100375612F013231N/AMINQRNYQTCKLIKNRIDLYLHEMAVLFANLGTDSTQEEVAEAYEREAEYIELIAELDPDKGDRLRSSY
Ga0257126_100375619F005132N/AMVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYEDLEAKVLAETLDVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFNEEDSYQGNVFYPQDGITNKTCEDGGVIYTP
Ga0257126_10037568F063073N/AMNLTAEEKSSTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLSINDVIFKVDISDYTGIEGGFGYIFFNPSSGRLLIEKDNVKKVYKVEVDLLDESVY
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