NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257126_1002725

Scaffold Ga0257126_1002725


Overview

Basic Information
Taxon OID3300028287 Open in IMG/M
Scaffold IDGa0257126_1002725 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11467
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (96.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004646Metagenome / Metatranscriptome429Y
F067630Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0257126_10027254F067630GGAGMAHLDIDTTTLEVATRALTLFKTQYPDRITVWAETAEGQLDIKIGSIAKHKSERGGAMRHHVYFHKTNALMEV
Ga0257126_10027256F004646AGGAGMIYAIADVPHEDYDNYDMLNKLFHALSPHGWQNSSWKNDTCPSLIKEEIHGNACRIFVDYLNPDMREDPRWGLLSYTVEDAEGYLVLQENFNDADELIKSLIGEG

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