NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268283_1033640

Scaffold Ga0268283_1033640


Overview

Basic Information
Taxon OID3300028283 Open in IMG/M
Scaffold IDGa0268283_1033640 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_36m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1654
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034443Metagenome174Y
F089755Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0268283_10336401F089755N/AMIDITETPNLVSFAGNPVLFEACSSEYLVSLGTRAEFELVVSGIDTNVGHSFTLKFAGKTLVFKSAGITEFNGLLFEVAYYGWTYIDFAFSIYQCFLENYDIQKAFDVTIGPVGTSERKITLKAKEAGADYSVTLTNVGVYGIAQGTNTPGTDDVYQDFFGILCLIRDSYGNAIGEDVKPTDLMGGAQFDISDYLRSKFSAWEITRFEFPELTGNVKMHGWDYLLKYRVSFAETIAGHVRGLQSTGWKYTLAGGLNHELLTCLNENYQEYFSIEANKSKFLTWLPTTKYSRSGVVEKLFFLFQNNPDLVQYRLVVVVTFTDYTHKIINATPLATYTPYTI
Ga0268283_10336402F034443N/ASEIPPYPFTWLGDIYYVVDTNTWWQLSVNPITFLIEWIQFPNGPVLTDKFFYKYGDEKNKFETSFSSLYDRFGIVSCGNLGTDKDKITPRLFWVGMTGGWGTPVELRGLADGGNLSLRYTGSHGIFNLFWKDWVDWIMNTRKSVKIEKQMDFIELKNIDFTKRYRMNGINYLVSEISVTLNKSSIKSAQLKCFSCP
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