NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268283_1026016

Scaffold Ga0268283_1026016


Overview

Basic Information
Taxon OID3300028283 Open in IMG/M
Scaffold IDGa0268283_1026016 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_36m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1932
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)36
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023523Metagenome / Metatranscriptome209N
F068454Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0268283_10260162F023523N/AMISEQSLEGWDNNPVKFSNVKYPQTKDDNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEGIEIPQRIILICSTAHSDSNRVFKSLKNLDWDNDVIEDYNDSLLQDKMEELKHDLDHAKEYKLYKSVYKKFKECKDIDELKDEEMKLLYKFDFIKFQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLLALFKFANKNIILDDIYPTMSAFITEEQFKNLYDYATDESYNALVIDATKGKPIFKKNFESILKIN
Ga0268283_10260164F068454N/AMKFIKYKQVARITLYGFDDLLRENNSSVYTEPLNSEFFTNNLAGGVPIGNNAKRMRFQIKGLDNIKLSENARFCMESINVPIIYDAVYERKSLSQTIVRMSNLSSINCFDSNGNGQTDPVIFTSQTHPSQQRLGTVTNNVVYSNTDASPVFYNPYPEMLYNFPISSNFL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.