NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257121_1067400

Scaffold Ga0257121_1067400


Overview

Basic Information
Taxon OID3300028198 Open in IMG/M
Scaffold IDGa0257121_1067400 Open in IMG/M
Source Dataset NameMarine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1400
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014465Metagenome263Y
F024106Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0257121_10674003F024106N/AMMEESTFHSSFQVGDLVTLKHYGSGTEPAPIAVVTSLDALVFDRIQIQFFDTDRPEMAAPGHWKVVSRNENRPEDR
Ga0257121_10674005F014465AGGMKPRGMVMIGALVRDCSKIMKIVTGYKCDGKGEWVQFAGDHVNAWYQLQNFEILSLEP

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