NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257110_1018153

Scaffold Ga0257110_1018153


Overview

Basic Information
Taxon OID3300028197 Open in IMG/M
Scaffold IDGa0257110_1018153 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3133
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019668Metagenome228N
F021557Metagenome218N
F064806Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0257110_10181533F019668N/AMIDNKQTNEVDMSKQTIDYVGISGSKGSSFGFYFSTLENKEIVYTKTYLLKDLVNDLRTKYTLPNSYMASSSMDFATEEGFYHNGAASQVLSLASRIADSGKSIYEYTDKVLDEQTDIRNIEFSGLNKDEAEDWYTDGKVAFDN
Ga0257110_10181537F021557GAGGMRTILCALLLTSNAIACDYKSDDEVKFEGYIESVRLIDKKVYPYVDDTRICTMHIESRIEGEWYPSKSKYIFGSEMSEDTACSLAENRAKVKVMRKIIPETLTSERNLKCDLTTVRNSCKIIYMNVEMPMVGTQRVKLKTCEE
Ga0257110_10181539F064806GAGGMFKFIFGVIVGFMIFKFDWIDDMSNLINDYGIKDAIIEKLQDEVDIDNLNNGGEIE
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