| Basic Information | |
|---|---|
| Taxon OID | 3300028190 Open in IMG/M |
| Scaffold ID | Ga0257108_1012165 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2533 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010879 | Metagenome / Metatranscriptome | 298 | Y |
| F016206 | Metagenome / Metatranscriptome | 249 | Y |
| F023717 | Metagenome / Metatranscriptome | 209 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0257108_10121652 | F023717 | AGGAG | VTKFRKMKSKKELEKEGRTLGIELDRRHNKEDLIAELEAVEPEELPRFAEESSDVTWNSIEEFTEVVTTTGMIFNSDFIPVNIEALYEAFTSNPEEFKETPAYKFLTQ |
| Ga0257108_10121653 | F016206 | AGGA | MAHAHKGKKKVSKAMGAILKAPKKAEKVVKAAKKHVNHTHWDTIEDMATALEHSGLTPEQINVHQEWEAYQSDKDDYRNVQNLKSIEQINKES |
| Ga0257108_10121654 | F010879 | AGGAG | MTKRKVLKEVLFDDVEEKIEYDFLTRDQFFAKVPETPPMSVSGVEMWERYLQNPKGFNF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |