| Basic Information | |
|---|---|
| Taxon OID | 3300028176 Open in IMG/M |
| Scaffold ID | Ga0268284_1003030 Open in IMG/M |
| Source Dataset Name | Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_40m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7014 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Sakinaw lake, British Columbia | |||||||
| Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040985 | Metagenome | 160 | Y |
| F041560 | Metagenome | 159 | Y |
| F076791 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0268284_10030305 | F040985 | N/A | MIDITESPNFISFAGNPVIYEACSDRYLISLGSRASFELVVSAVDTSIGHSFKLQFAGKTLEFKTAGLTDFDGLLFEVGSFGQTFNDFANSIYQCFLENYDIQKYFNVTLDGPGTSNRKIHLQAKQSGTDGSIVFSNVNVIGVGQGVNTPGTDDEYQDFFGILCLVRDSANNPIGEDIKPADFIGCARFDISDYIQSKFAAWEIQRFEFPELSGNFKSHGWDYLLKYRVSFAESIAGNVKGLQSNGWKYALAGGLNHELLTSLNEKYLEYFSIAANKQKFLSWLPLAKYSRSGVMEKLFFLFQDNLTSVQYRLVVIVNFTDGSHKVINATPQVVFPAFTVMEFKIGFDHLDLVNAQPGKIVRSWEVFLMDSNDDYLSERRVFYNDSRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERLFGSIVREEKYSFFNAPAKQFSAKETEICKANSGWISLEEKNCLRELLLSLEAYEQIGKELFQVVVKSAKITPFLKDGEYLFNLEIEYERSYQNSFFSVHIPESSANPVILSQPLTWDNMEVSFDDMEITFDQIEY |
| Ga0268284_10030306 | F041560 | N/A | MLSILIGDQSLDLNDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNVSILGWKNRIASTRSIYETFEGSIRWNGMVLYTGQIKIKTAGEKTFEGTLYINKGNFNFEVKDIFLNRVDLGMMSFESDQQAVDYFNWSLTHFYPEVDFSMPEISNPTFYDPPATNPELMAYNYIFSDGWLRKYTTDGQCRTILTPFLYLKFVLNKLAEIFGYRLQDEFFTSSIELSRLVVYNSVSLSEVLFGLQKLYYCRLVPNVKVSEFIAGLEKWFNCSFHVDTRQRVIRIVGNKEVLLRSEIVEFSKNILSLIQEIPEQITGFRFLLGPDAGDMAYQAQLDAEKGITEMIKGAVQHFSDIPPYPFTWLGDIYYIVDTNTWWQLAVNPYTFLIEWQQLPVGPMLTDKFFYKWGDEKNKFETIFSSLPDKYISVNCGNLGADYQKITPRLFWVGMAGGWGTPVRLRGFANNSNFSLRYPGPNGLFNLYWKDWVNWIMETRKSVKIEKQMDFIELKNLDFTKRYRINGINYLISEISVTLNKASIKSAQLKCFTAP |
| Ga0268284_10030307 | F076791 | N/A | GQEIVIDPKTTKNLMVNYPHVIDAINFARVPQRAIGRYLDSPASAPAGAPAAVDPQFMASINRLNSLIEQGIPAFISYEHLRETTNRVNEIEAEVSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |