NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247663_1055937

Scaffold Ga0247663_1055937


Overview

Basic Information
Taxon OID3300028145 Open in IMG/M
Scaffold IDGa0247663_1055937 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)671
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057255Metagenome / Metatranscriptome136N
F060940Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0247663_10559371F060940AGGAVIAPEPSREPIVGWRQWNFMYPHFLANLGNDTIYVPRERIEAHCEQYSTIGTLGLRKDQSEHQAPHLTCTCGIYAYKEKPRLLREMRNIYSGLRLVYGEINLWGKVIEHEDGYRAQFGYPKRLWCTPA
Ga0247663_10559372F057255AGGAGMSQIGEPLRIIEVEPLKEPVPEKEVPFEQPADPVKEPA

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