NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228608_1072165

Scaffold Ga0228608_1072165


Overview

Basic Information
Taxon OID3300028136 Open in IMG/M
Scaffold IDGa0228608_1072165 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)984
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052546Metagenome142Y
F065685Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0228608_10721651F065685N/AWKQRQELIMKPVVGIGSNTKYGRVLKIQRDGVVVENGRGERETVSFRKIEKTLKGFDK
Ga0228608_10721653F052546GGAMNKIFARRIVRLTPMIKNKINTAAILILPTILSSGCVIIPNRNTLTLNKTIELDERAIEKMNVGIRLEWIR

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