NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228608_1070515

Scaffold Ga0228608_1070515


Overview

Basic Information
Taxon OID3300028136 Open in IMG/M
Scaffold IDGa0228608_1070515 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008104Metagenome / Metatranscriptome339Y
F016593Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0228608_10705151F008104N/AMGLLSNISEFFASNTYVQATEHSIATNELENSIEDLNGRYRLGHTLVGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGNDIDYSDDFAKSNKAKAELKAFVNHCGGNNKGLYEVLTHASFQYEHKGALAFYVRWNKGRTKILEFKSLDPKGVRVGEPNEKGEVTHYIVRRSFGYGSNSVQHNEPRKIKAFNKFDKSGTEAVLYVGNPYSGNPY
Ga0228608_10705152F016593N/AGVVNTLSFVKLSSFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDLEGGEYELTITNSGESYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
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