NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256368_1003247

Scaffold Ga0256368_1003247


Overview

Basic Information
Taxon OID3300028125 Open in IMG/M
Scaffold IDGa0256368_1003247 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033765Metagenome176N
F052939Metagenome142Y
F106097Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0256368_10032471F052939N/AMETEINMNIEQQIIEQIFDTLMKNDKNPDHFNFATDLRYDHSINYNPDNPTISLVVANKGIPTTYKISINEVNNEITT
Ga0256368_10032472F033765GAGGMKSLLRTILDECEKNKLMYRANACELWNHGATDMIVPWGYDFEALAESFKEFEHDERLGNIQILPESKVQTHAELIKSIRQNAIEDCGCQEQELNIKAMTDEAIINDYPDEYYSGRYWIMWTNYGGNEHTDCFTDYTTGLDQYFDVSKLTDEWEDQYIDFKLGLI
Ga0256368_10032475F106097AGGAGMNRQQMIDILLEENVNGNWTGEYYFEKDNIHMVWCEAVELWLMLNYKTFPKTFESSCTLEEAFKYTFADQLSDEGIKEFLDNREKNDE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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