NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247586_1011133

Scaffold Ga0247586_1011133


Overview

Basic Information
Taxon OID3300028102 Open in IMG/M
Scaffold IDGa0247586_1011133 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 45R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1473
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013838Metagenome / Metatranscriptome268Y
F027314Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0247586_10111332F027314N/AMACDVTLADISYSCDDVAIGGIVELHVANRSDALTALTRTDADREVTAATAVTGVSQISFNNKDGFSVFSEVKTVAADGVVSTVPTVSVELPKMTADKITKLNDISKGGAELVAFVETAAGTYHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDELGLSYSISAADFGLATA
Ga0247586_10111333F013838N/ASAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTEAVLTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
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