NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247675_1001039

Scaffold Ga0247675_1001039


Overview

Basic Information
Taxon OID3300028072 Open in IMG/M
Scaffold IDGa0247675_1001039 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3341
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028020Metagenome / Metatranscriptome193Y
F072222Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0247675_10010392F072222AGAAGGMNVMVRMCAVSAAVIAALAGCGSQAQISAGHPTPTHRACPEGSAYPPGTASEVDYIDSIWHDSVSYEYFPSVRITTSQVGSVVTRIQCSMATYPDTHAPPSRFADDTATALVAGTPVHAVKGFSPRCRLAAYMAGHPRTYVAVNNTNHGPVPRACAKVAG
Ga0247675_10010395F028020N/AMNMEQNAVRRFAATFVTDTTMPPTPRPSWLRRGRYDLVEVADVIIALICFAATNSTLTNANAGHHGHHA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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