NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256380_1006386

Scaffold Ga0256380_1006386


Overview

Basic Information
Taxon OID3300028039 Open in IMG/M
Scaffold IDGa0256380_1006386 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1812
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)2300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000929Metagenome / Metatranscriptome830Y
F082821Metagenome113Y
F089027Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0256380_10063861F089027GGAGVRWLWRSRILITVTQDAINQMNSILKQKEDAVVRYELRGGGCGGLIAEWKTEPHHEPEQGEMTWELTHGKFVVDKATTSFIDG
Ga0256380_10063865F000929GGAGMSNGTQINKSISIGHIVTTVGLVIGGFTFIYDLRESVAIQAFQLETVEDRLERVVARTDDQFGEIMDHLIRLEEKLDAIVFPNPRNGTTN
Ga0256380_10063866F082821N/AVPIRAVCWDDIDEALEYHQGMLGEYPIGKGWIDNKNGSSFGAIMYNPTKPSWTFLSFHQKEGEEAVIVCAITGGSQWDIIHPGDESEKLEL
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