NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1012236

Scaffold Ga0247723_1012236


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1012236 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3235
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004840Metagenome / Metatranscriptome421Y
F007263Metagenome / Metatranscriptome354Y
F013527Metagenome / Metatranscriptome270Y
F014138Metagenome / Metatranscriptome265Y
F020168Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10122361F014138AGGMANRFRVEIYDANKLNDITIYSDQGVDKEYLTELVF
Ga0247723_101223611F013527AGGMEHYEFNAFITVEAESYDEAIDVFQFQLKYGINKDNVYVADINQLTNNESVEV
Ga0247723_101223612F004840AGGAGMYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGFADEYSTVNLHTPTGKCYTRIFYREGRKVLTV
Ga0247723_101223614F007263N/ALDETEFFFVKDEQHFCCDESQFVYVCKAHGEQMDCYFCGFDYDKDCEEQH
Ga0247723_10122368F020168GGAMTDLIGSIFAIILILFLCSPIILAVYMWNASKIDIDNDGKEDLPNRWNK
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