NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008290

Scaffold Ga0247723_1008290


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008290 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4309
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y
F020681Metagenome / Metatranscriptome222Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10082904F037698AGGAGMCDSHDQGEHEMNWIYQNHLREQWIVDHPEAEYEGWMSI
Ga0247723_10082905F020681GAGMVKFRCNFCSANSEFIWLDGYDSHEGFRVFQCLKCQAVGTKNLAESTDTQEPVMRCTKCGAWMFADKECHTCAILMIKENTK
Ga0247723_10082906F002162AGGAMPNYDYECPGEEIVIVMDLPMEHKTPKCQVCGAEMRRVYTAVPFILRGTGWASKDG
Ga0247723_10082907F007469AGGAGGMGELQIIDGSGLTATFTDEGVKVEPSTITCDTCNDDRLLHEGDLLRCYSCHTINRIPYHA
Ga0247723_10082908F002357AGGAGMAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDAEKGYILVQATLWRDAKDSSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMKKVETNPSFKEKLESRQNMYGKPGTKSAQIETILRDSFAADKKPEPVAWSVRDVVAEIGASTPNEPPACEHGHILKEGISKGGKPYYGYVCKAKQCEAKWAKLTANGKWYFEGGE
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