NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1007342

Scaffold Ga0247723_1007342


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1007342 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4679
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F003863Metagenome464Y
F013279Metagenome / Metatranscriptome272Y
F017972Metagenome237Y
F020863Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10073421F020863N/ASTTMEDLHRLVGVLEELVKPLFEGEEVEDTYESNKRPHLVLQAGSKTYGRAFRIHFSGGSHYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGKMISEREGKE
Ga0247723_100734210F013279AGGAMQYDYRCPDCNSELTIERSIHEDPREPSCFDCHVPMIRKWDSPAITFKGKGFYSTGG
Ga0247723_10073426F000821GGAGGMNKEYLEAKFDLCINQAEKNIKEEEIAEAIKNLRRANNALSQLFGFEEDENE
Ga0247723_10073428F003863GGAGGMESRQVSGKQAIYHRNYRRARDRALVRLSHLYADEYRRLLVEEREADELEGKKWVGVIDNTRLTITTHTRANAVPDVAGRTDYEGADESYDGGEA
Ga0247723_10073429F017972GGAGGVRTRHLQLVSSEHLVTTHNRESVRSHFGPVNPASTTLLAQETLRANQLAQLSELLNCLENVVENLNYKSFTLYDTLNTVIEEVSAVLSGTPIESAGTDPVH
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