NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1005534

Scaffold Ga0247723_1005534


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005534 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5675
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006623Metagenome / Metatranscriptome368Y
F007170Metagenome / Metatranscriptome356N
F009888Metagenome / Metatranscriptome311N
F024556Metagenome / Metatranscriptome205Y
F056616Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10055342F056616AGGAGMPFTKSFGLVGENCTVTIAFGGFQDGSPTAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSVEIELLVDGTQQADGSPVFFNKEGYYVQIVVTPGALSAKTFVGIVTATGISIASGEAVSETATIMLGANGVSTAWTSA
Ga0247723_10055343F007170AGGMAFEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMGIYNTVAPQNDPISRRPVQVPYVVFSRAGAGGEDEDTLCGGRAFTYPNYRITVWDTESGAMSMANIQTIMSRIDTLLDNQTVTSTTPRLYVRRVSTDQTFTLSDGGRTDFGVTAVYRCLTQQ
Ga0247723_10055345F009888GAGGMAVIFDLTEDPQQVVQASAWVGDWHSYVVRLVDELGSPIDITTGTLGITFTNILTGSAYTFPSGSVTLTKQYSAQGILSILNPAAYATAAMIRITVSFTVSTTVRRFGPLEIEVLAP
Ga0247723_10055347F006623AGGTGGMNLQNFSIEPNPQNPADYIIKGDIYDNDGVFVGDFGPDGTSMFAWWSTQDEAFQFNYALQFSQIMAQEIADGVAE
Ga0247723_10055348F024556AGGMAVYGSKAVAAGVTAAVSSVLAFLTMPFKGTDMNALKVGK
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