NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1005271

Scaffold Ga0247723_1005271


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1005271 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5860
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F042295Metagenome158Y
F053841Metagenome / Metatranscriptome140Y
F085338Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100527114F053841AGGAGMRAIIKSAMAISELAYDLDNISTDDKKKIEDYSDEEIVREARHVLGLFTDPDETHWNAEDLRGENGSEQQKWARSEVRMLNAFIKKYS
Ga0247723_10052715F042295GGAMALKNFTKFTKHEAVEDSLNTLDCFANGCPMAGGISTGGRWVCAYHHQAPSEEWPRVTEALRDSEAIRLAITEVMKIDMISWGANTGGYPPKWQEFAALFDDYPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKS
Ga0247723_10052716F001629GAGGMILNQGKLAGGLADELIAVIRKYDETLYMSTVIGVLELVKQQLIQENVEDDDE
Ga0247723_10052718F085338GGAVTKHEAQKILDQIRGGFSDAYTEACTLECLNLTGDLGAHEKLRGKGVDQPIREEGYRARLRERAIMVARSKE
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