NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1003771

Scaffold Ga0247723_1003771


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1003771 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7421
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y
F018537Metagenome234Y
F018924Metagenome232N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100377118F016809N/AMSKTNEEFMKQQLTGSIGGDEDFLYEQYLAQEKMNEEYWQWKSVQSHSIFPDDMEYDDEYYKSSYLPTPEEEAENFKQIKQHGHS
Ga0247723_100377119F013085N/AMDILNEIIEASNHMIDALEESDFFLENPFLEQIPLKRALQIRMQQKWEQEDDMFLTDEEFLDVCQSVSNNEIGKTIEDLVDKGALNMSINEDGEIVYSANKDYEWEKDEEEDL
Ga0247723_10037714F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKRWSKSRQNDVPWKVAQYIDIYLHAANPNRIRISQKKGMERKNLSLSDKNVIIARTLGSMGYSLADGVKHTQQSHSSSPLMAIMKLQYQTQMQDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNKVSFSQLKSHYDIVMRGNATTQKGGSFIHHLHSLIDMRNAIGRRCGRYLYKDTDGKYKVSNI
Ga0247723_10037715F018924N/AMENIKLVTYKLKQMTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGEEGSPFLNDELIQLSTAMDSEMQSIVRQLNGDRILNNVLTNNINLN
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