Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1002872 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8887 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006893 | Metagenome | 362 | Y |
F019996 | Metagenome / Metatranscriptome | 226 | Y |
F022646 | Metagenome | 213 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100287216 | F006893 | AGG | MENLTIKNISEITKKVLCNHKLYKDINFFDVPHNKVCLAVIREITELSYNEIGKAYNKSWFTIYASVKDTQKNGLKAFTNKVIDLVKEQVK |
Ga0247723_100287217 | F022646 | N/A | VQIAKANIIHSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDRFCIPMCFTCHTQQHLIGELEFFEKYNINPILISMKIASISPCNKINQAKQEGAYNGKLNYQEHIRNNKKSSL |
Ga0247723_10028727 | F019996 | AGTAG | MASKCLFCKREMNNKLEQHIKACHKCIVDLLMKKHNLKVKKQAPVKLNLKKYE |
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