NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002497

Scaffold Ga0247723_1002497


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002497 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9738
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003522Metagenome481Y
F004950Metagenome417Y
F011921Metagenome / Metatranscriptome285Y
F024784Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100249712F011921N/AMAMVVYFCVLGVYNMANGLEHIADILKRLNDEIKFDNDKWERENVTTTTLRPSNDATTSTRGESKDEL
Ga0247723_100249722F004950AGGAGMGKGSGRRPLLISEQEAQDNWDKIFKKEKNSDDVSPHAYEYELNKSTGNVEKRFIDGTSKPNESQFNGK
Ga0247723_100249724F003522AGGAVIYKQKILDYIKEPRTIKEIAEHLEANYHTVKNTLSDMRTEGLLHAYKDNNTRLMNYYIPQPHPLQSIFGHTANFTDDQIKGVISHNADDAKHNLQQRTTQETYGQSVAYTLTQYD
Ga0247723_10024974F024784GAGMGRAEKILEVVVWFLIVSGIGWFFYGCYQLIDLFFLRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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