NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001544

Scaffold Ga0247723_1001544


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001544 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13369
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F002935Metagenome519Y
F022197Metagenome / Metatranscriptome215Y
F045752Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10015441F045752GGAGVADPNQTGARGDWLCPCSGCSKSIAAERKQLIELFEKHKYEYLVYRGSSFDQDGNLVWAKDDAEAYAEGINEVIKLIKDRMPKPKTKHQ
Ga0247723_100154428F001507AGGAGMTTTFKPYTISELVDEIYEDNLSHFEFMENMNGGDCDCNLHMTMNTILKYWGE
Ga0247723_100154429F022197N/AMAVQNVSGRGYNSNMTLETEITENPEMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWDIEENVFVPELGEWHTK
Ga0247723_100154430F002935AGGAMRNRTKGYIGQIVDGKKLAVIANDIYRLQYSNEFSECTVDNLLFVTLDEKNVFGDPKYALVCTEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTVDISDYIRVFGDRLDSNCSLWQSKMSVAEDTIVI
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