NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001253

Scaffold Ga0247723_1001253


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001253 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15197
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (91.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F003965Metagenome / Metatranscriptome459Y
F009530Metagenome / Metatranscriptome316Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100125340F002935AGGAMRERSKGYIGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDISDYIRVFGDRLDNNCSLWQSKMSVAEDTILV
Ga0247723_10012537F009530GAGMTITYSLWQGSRLLSIDNIATDIKEIDKLINTLNESDLGKKVKFSANVQEIKVTK
Ga0247723_10012538F087194GGAMTLDEYKQYIEAQRLSSLAIALEALTKSKSLQERESK
Ga0247723_10012539F003965AGGTGGMTTLTTNTVCKEHTPHLSAISQVGDDQFTFCEVCENNIERWYDDTDDERLPMWRDWKVSK
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