| Basic Information | |
|---|---|
| Taxon OID | 3300028025 Open in IMG/M |
| Scaffold ID | Ga0247723_1000432 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29057 |
| Total Scaffold Genes | 68 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (67.65%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia | |||||||
| Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001507 | Metagenome / Metatranscriptome | 681 | Y |
| F002515 | Metagenome / Metatranscriptome | 552 | Y |
| F002935 | Metagenome | 519 | Y |
| F017301 | Metagenome / Metatranscriptome | 241 | Y |
| F025743 | Metagenome | 200 | Y |
| F039103 | Metagenome / Metatranscriptome | 164 | Y |
| F084246 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247723_100043231 | F017301 | N/A | MLASYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRAINPNDKAFGVLPDVKEVEKALKAAKAPAKKAAAKK |
| Ga0247723_100043245 | F084246 | AGG | MSDKIEDTTCYTYKVEMIIQILAEDEPKAADQLEKNGGYVTSRKVTLMDSVPLFNGKESE |
| Ga0247723_100043256 | F001507 | N/A | MTTTYKPYTISELVMEIYEDNLSHFEFEENMGGDPCDCNLHITMNTIMQYWEG |
| Ga0247723_100043257 | F002935 | AGGA | MSERSKGYIGQIVDGKKLATIANDIYRLQYSNDFSECTVDNLLFVTLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDRNCSLWQSKMSVPSDMIVL |
| Ga0247723_100043265 | F002515 | N/A | MKKTPEELRRLMELRRSNAASSVPSKKKYNRKKCQSLMLELKKESE |
| Ga0247723_100043266 | F025743 | N/A | MKFVYADLLTPSQLMEGDLINIDNDIVEVISVVDDATGDNYTITHKNEYDEVEETNCTYEDMFKLYVFIDDDE |
| Ga0247723_100043268 | F039103 | N/A | RVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |