NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000174

Scaffold Ga0247723_1000174


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000174 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40683
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (85.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F059896Metagenome133Y
F066470Metagenome126Y
F075715Metagenome118N
F075748Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100017411F066470GGAGGMTDLDKRIKGAMNMAVRQRNYRRARDRAMTRLSNAYPETYKELLEQEKIVDEQMGKKWLDIDGSTDQYMDLNSDTSPTGGGEGEQANSGPDQGNDGGKA
Ga0247723_100017428F001094AGGAGMNAKMKSMLATYLRAGVAAVLALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK
Ga0247723_10001745F059896GAGMARIRVTGAVPHANLCARHAAALCESVGDATGAAKFTALIEGDREGVSA
Ga0247723_10001748F075748GAGMLSKREILEIIDSTASFNAYIEGMDTLNGQSLDLVMQVAGVDGQEWTDEECLEIIKEIVDHTNNYRNTHDWAD
Ga0247723_10001749F075715GAGMNIERGKIMNKEYLIAKADLCKDLAIEQLSNGENEEGVKNLKRMIRALEEINLINYLEERRGRE
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Institute for Fundamental Biomedical Research
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