NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000100

Scaffold Ga0247723_1000100


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000100 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52466
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (73.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F009885Metagenome / Metatranscriptome311Y
F065439Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100010022F009885AGGMTTTDWAQFILALLSIGAIIVSSIRWYIKVQIRPIAEAIEDIRAETKTNGGTSMRDEIKFIKLEQERSAKTRAAYNDKLDHMYDILINYISKNSK
Ga0247723_100010083F003688AGTAGMRRAFHSVVPPKGFNIELIDNEYFLTIKLNEYKFAKMVHDDKIQALQYVLNLKKALEMEGAIVLVTREAIK
Ga0247723_100010086F065439N/AMEKIVSKNKELDWVGWDVVERKRSDLARTSPSGVRVKNAWYIQKTFNLDRNGWDIPNKYG
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