NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000054

Scaffold Ga0247723_1000054


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000054 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64604
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (93.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F001817Metagenome / Metatranscriptome630Y
F020493Metagenome223Y
F045610Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100005416F001817AGGAGMGMQTDVLSAHLSAAGTLYTGRTRLKGIIVAPKASTAATFEIRTTSATGPVLFTMDIASLGTPNTTCIIVPGEGILASDGLYLTTSVGTVTGITVFYG
Ga0247723_100005420F045610AGGMKHEDIKKDMPMMKKVANKAVMGHEKRMHKMAKGGTASARADGCAQRGKTKGTMVGMNKGGMTC
Ga0247723_100005442F000340N/AMNIQDILKAVLPVIVAALAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEKRHAMKEEIYRDIHQLQVKVQLLEEREKRK
Ga0247723_100005463F020493GGAGMRHFSWAICMWIVFCGLIVYLTELSRREEVYKLNCELLLGGWHPDVPKDYAKLCEEAKQMRSSR
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