| Basic Information | |
|---|---|
| Taxon OID | 3300027986 Open in IMG/M |
| Scaffold ID | Ga0209168_10004299 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9481 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008143 | Metagenome / Metatranscriptome | 338 | Y |
| F019446 | Metagenome / Metatranscriptome | 229 | Y |
| F069867 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209168_1000429911 | F069867 | N/A | AEAEEALMPQRIHEYPEVIGKTVAKVTVTNESDWHNISVKFTDNTAIHFTIRSFMHFEPEHIDWTTGNGKILRSYPFVREREG |
| Ga0209168_100042992 | F019446 | GGA | VTDAENQFLENMPDEIKEVLRWRADAQSRGRASQSIADFAGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRTSPRSTGAWLNLGFALRRLALYRTQDPEETNRARLQSAVQAFDRALELDPDNNGKNIRAWTGMSLAYHMLDMYEKELECCARALESDRSDPKLWLLYSFALKSAGREDEALSTMNDAYEAYILAGKPDELREVFADVQSTTQRPCRQRMAQ |
| Ga0209168_100042993 | F008143 | GAGG | MKSVGGIHRTRLAASKVHRHLVKEARRTVQKLGWQVPEGDMSPTLVGAIPLPFPVPESFETAFGYKGNLRFVQFGYTAGSPQFGYSDGGDDLPSDGSLWSWFLHHPAVAPYLPESRYPTLYGKFPSGTERPPLEQIMRGGAELPTCHCLLLDRRDRRTYVSERDQAMILFALMEPDDGDAHNVYVDGMLMSPGSEDYKVAQPPGVLDEFRRFMDSRVQAFEGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |