Scaffold Ga0209284_10452512

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209284_10452512

Scaffold Ga0209284_10452512

Overview

Basic Information
Taxon OID	3300027983 Open in IMG/M
Scaffold ID	Ga0209284_10452512 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	624
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.605	Long. (^o)	163.163	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009733	Metagenome	313	N
F010818	Metagenome / Metatranscriptome	298	Y
F017930	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209284_104525121	F017930	N/A	PNVQHTNPDGDKRMTDVAFTLTHSHPDSEWTLDGDDYAGLTWLSDTPKPTEQEINAAYPLAVKALASKEKARLKVLSDARAFALSLGFTPAMLAVMYPQLEEPSSE
Ga0209284_104525122	F009733	AGGAG	VSEIDQELHVDTVEPEPVKKKPTSSKHPKVADSTERARAIVRAKLKE
Ga0209284_104525123	F010818	N/A	VDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESL

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