NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10014571

Scaffold Ga0209298_10014571


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10014571 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4068
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002044Metagenome / Metatranscriptome599Y
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F007469Metagenome / Metatranscriptome350Y
F042333Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1001457110F002044N/ANFPMANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD
Ga0209298_100145713F042333GAGMDGYDTADGFRVFQCLKCCAIGTKNLAEATDTQEPVIRCKQCGSWQFVDQQCHTCELIGA
Ga0209298_100145715F002162GGAVPNYEYACDREGSSIVLDLPMQHEIPFCQVCGFELTRVFTAVPAIFKGTGWAGKSG
Ga0209298_100145716F007469AGGAGGMGDMVMIDGSGLTATFTDNGVRVEPSTIYCDTCNDDRLLHEGDLLRCYSCHSINRIP
Ga0209298_100145717F004599GGAGGMAFNLADYEDVATLNKWFISNFPQGRSDISVISHDAVNGYILVQATLWRDSTDQQPCVSNIAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQVIEMALRKSFADDAKPASEPTTWSVGDIAEALSSKPKQQECVHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREEE
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