NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10009104

Scaffold Ga0209298_10009104


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10009104 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5372
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F003265Metagenome / Metatranscriptome496Y
F041187Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000910412F041187N/AMTNRPDFRSWSQANLAKFADDVYAKLQEQDDIIQQLQCDLKTALEAYRTLNTTDTKEA
Ga0209298_100091043F003265AGGMRWFWLLLISLVFWANAKAPCIVTDFYALSWLGNPSERHQRLLEWLTTNGDNCSSEQLANIWNNLAAWTGTADSSELRVRVLYYYARAVEREKK
Ga0209298_100091048F000166N/AMSNIPTPEDARFFALCVKKWQAILNLGDWRIEKGLKPAKQAMASVEFNEGARLATYRLGDFGAEQITPESLDCTALHELLHVFLHDLLAAAQDPKSSQDDIDKQEHRVINLLERLLSKDSNDSA
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