| Basic Information | |
|---|---|
| Taxon OID | 3300027973 Open in IMG/M |
| Scaffold ID | Ga0209298_10001716 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14137 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (31.25%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F002413 | Metagenome / Metatranscriptome | 561 | Y |
| F005588 | Metagenome / Metatranscriptome | 395 | Y |
| F019449 | Metagenome / Metatranscriptome | 229 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209298_1000171612 | F005588 | N/A | MITIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLEDLHDLQRTIIEDQAADIRLLRQRVRDQDDAIIKGTAITPDAYPHE |
| Ga0209298_1000171613 | F000957 | GGA | MSNFAHLEGMRNLILEIYEVNERIMTGDICSAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV |
| Ga0209298_1000171621 | F002038 | N/A | MTTTPAGIERIARTVSGQYALLLLLDGYPYVELTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR |
| Ga0209298_1000171626 | F002413 | N/A | MAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLEGNFMAEDFKCENRDALVAFGRFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGVGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMSEGRILAKSWRL |
| Ga0209298_100017168 | F019449 | N/A | MTTETFTTIVVPGIASLAYFSAGVACFIAHRPALAIMWLCYSIANICLLSTVLRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |