| Basic Information | |
|---|---|
| Taxon OID | 3300027973 Open in IMG/M |
| Scaffold ID | Ga0209298_10001548 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14880 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (76.92%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000468 | Metagenome | 1102 | Y |
| F002044 | Metagenome / Metatranscriptome | 599 | Y |
| F002162 | Metagenome / Metatranscriptome | 588 | Y |
| F020681 | Metagenome / Metatranscriptome | 222 | Y |
| F105165 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209298_1000154810 | F002044 | N/A | MANTRKPIKRKKINRRVVRHSPEPLSKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEEND |
| Ga0209298_1000154817 | F000468 | AGAAG | MTQFTPDWKLTVSGTEYTDITISDITHASGRSDIYSQPNPSFIQITLVALSGQTLPFDLNDSLALEVKNTSGTYIPLFGGNITDVTAEVGATGSIATVVNYTLIAMGNLASLAKIITNGILSQDEDGDQIYDLLSSVLLGTWNDVPAASTWSGYSATETWLQAVNLGLGEIDQPGLYVMENRDSSPDTIYNIASYIANSAFGYLYEDNQGNIGYADADHRQTYLLDNGYTEISANHALAQGIRASIRSGDIRNDIYINYGNNFGSQKTATDLTSIATYGYKGETIQSLIHSATDAQEIADKYITLRAYPYPSFDSITFPITNPEMDDADRDALLGIFMGQPIHITNLPSQIQNGSFEGYVEGWSWSTGFNELFLTINLSPVNFSQVAMRWNTVPVGEAWNTISATIDWANANIIA |
| Ga0209298_100015483 | F020681 | AGG | MKFKCNGCSRKTEFIWLDQFNTAEGFRVYQCKDCGCVGTKNLAEATDTQEPVIRCTKCGSWQFVDQVCHTCELIATKEQA |
| Ga0209298_100015484 | F002162 | GGA | MPNYEYECDREGLSIILDLPMGHKIPLCQVCGFELNRVYTAIPAIFKGSGWAGKR |
| Ga0209298_100015488 | F105165 | AGG | MYAQIACVYVGSDMTAKTDMLQLAWILLGLGTITWIIHEIKETAFQNGYWKGREAGWQSHRRLINTKVQSDEVFDYDKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |