| Basic Information | |
|---|---|
| Taxon OID | 3300027973 Open in IMG/M |
| Scaffold ID | Ga0209298_10000318 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32444 |
| Total Scaffold Genes | 63 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (20.63%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001732 | Metagenome / Metatranscriptome | 644 | Y |
| F003904 | Metagenome / Metatranscriptome | 462 | Y |
| F008080 | Metagenome / Metatranscriptome | 339 | Y |
| F028094 | Metagenome / Metatranscriptome | 192 | N |
| F080979 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209298_1000031810 | F028094 | AGGAG | MSQQLQFDFRSPEEIAKQRKISEENEKVLNDMFSNDDYVYNRYVDFLLDLIPFRWGWRAKNWPRAIKWWAKCKYQKIRYGVSDDDVYSLGYNIALFVLPRLKYFKKKGKTGIPCCFLPDNFHLLKDEEQTAAEEKGVKEMGDALDEMIFAFEYIIDGDKFCELPESLSFKAKDLDFNSEKSIEEKESWKQYMEKANELNDRKNNGLILFAKYYDTLWI |
| Ga0209298_1000031813 | F080979 | N/A | MQDHKPINMKKISAKEEKNYKLLKEGQDFLVGDLIHLVDDEYVKLNEHNRLLKEKVNKYNKVLRKL |
| Ga0209298_1000031819 | F003904 | N/A | MNNLVLNIKKYLFFALLPTGIIVILAISSLKDIEQGYARFRFGRDITLYLRKSTDQLTYLGAAYTATSDKKFLDQFNSHLKEREKYFNEEIVINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFGDKYLDYKKKIYDNINSFRGLINDSSEKIIKDEAKLLNIYLYCLAGIVLALVYLIKQESFTPTKNKPIKKKPIKKKKQ |
| Ga0209298_1000031821 | F001732 | GGA | MKRLLILFMGLLLSGCFSTIKPAKQIDDNQKAIAKEEKKVDATVVEIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISVVKMLTPKAFEMSNFATKENVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILKEQKWIK |
| Ga0209298_1000031828 | F008080 | N/A | MLKIQIWMRGTMEYSQDTIPGPTIDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFEKGGRSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |