| Basic Information | |
|---|---|
| Taxon OID | 3300027973 Open in IMG/M |
| Scaffold ID | Ga0209298_10000010 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 114732 |
| Total Scaffold Genes | 119 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (10.08%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010082 | Metagenome | 308 | Y |
| F026824 | Metagenome / Metatranscriptome | 196 | Y |
| F034547 | Metagenome / Metatranscriptome | 174 | Y |
| F053807 | Metagenome / Metatranscriptome | 140 | Y |
| F063690 | Metagenome / Metatranscriptome | 129 | Y |
| F070891 | Metagenome / Metatranscriptome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209298_10000010101 | F026824 | N/A | MEMILTLVGCIVGLLSVIVCIWGFTHFDEWEIGIEFLPKDYNNFELGVTNRNYELTDGGLEQELRIGVLLFTFLIIFRRFDA |
| Ga0209298_10000010118 | F010082 | N/A | MLQPRLTNCIECASIPVLLTDIDCKLTDLAKQEYNNIIFSMTNYLPGPVIGDLLNYKRILTYKYCNPDYAIRFTVSQIASRVKVLIHK |
| Ga0209298_1000001048 | F063690 | N/A | MASIKKPGPYNPQKASAYVGKGVLRNGDTLTSIKGSITPVPNGHLIKKDGTSLKNGGKTKAIVKAGGQTHKVFKKKVDKGIGDKGDIVVDHTAGPSAGKWDKINLTEKSKAKTVKQGVASVKKWHRENPNYGKKPLKKK |
| Ga0209298_1000001052 | F034547 | N/A | MKSAKVSVKQAKSVKPMTAGKAKGSGTPRPAPKVAPPKPVDGNYMKEADTKLRLRSKNWPMKQKRLSK |
| Ga0209298_1000001094 | F053807 | N/A | MSYSLVFSAKPNCTHTIQVYEPNQQDSPYARSIKACSKLIDVIFAVKAHYTPSRRLHIKGRRYMYISSDEYKLIRFKNY |
| Ga0209298_1000001096 | F070891 | N/A | MQTMKQNNSLKTKEMKRLYEILFEGKKPEEQPLKLEIKLKSTATPQEHIDINTWYKLINDLNDKKLRLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |