Scaffold Ga0209401_1017110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209401_1017110

Scaffold Ga0209401_1017110

Overview

Basic Information
Taxon OID	3300027971 Open in IMG/M
Scaffold ID	Ga0209401_1017110 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3795
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F054583	Metagenome	139	Y
F085230	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_10171101	F085230	N/A	RRKQMKVKELIALLQQCNPETEVYTFNDHDIHAIHAVDEIDEWVHLNLGEQQ
Ga0209401_101711011	F002653	GGAG	MNYNRYSGRKEVAFEDMMTQAELERRVSAMSDEEQAHFKLLIHKIVMCYGDGNAQGVFIIGRAEDQVAGVVTLNCNEMEASQLMLAANDFFGFLNTLGAPPKENFN
Ga0209401_10171107	F054583	AGGAG	MRGTGFGNVVAQNVAAFRAQQRNEKRMNSKWKCCWKCQKDKDPRGGFLRIQAGLHKFICKDCMDAKEKERSMKLEEQSQHNS

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