NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1004130

Scaffold Ga0209401_1004130


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1004130 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9041
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (46.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026210Metagenome / Metatranscriptome198Y
F048101Metagenome / Metatranscriptome148N
F048121Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100413019F026210GGAGMSPILGANPLDYDAKYPQSVDNSVNDDAKIFVMERNEGKEVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEALRFVEDIGTKIG
Ga0209401_100413023F048101AGAAGMKKFKNIKEFLETCSEDEKEYVYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0209401_100413026F062446N/AMKSKTIRIIGFILYCLFWMAMAYLFIGCSSVSQVGKNEGWFPNGMSEDAQDYPTKYNTMDSPDGRRNPNAQVRIFGVTY
Ga0209401_100413027F082109N/AMWTPIEIFCLTFLFNHSPMANERLSVKEVIENREAQLLIESVSLRNEIQNN
Ga0209401_100413028F048121N/ATNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSVK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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