NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1000932

Scaffold Ga0209401_1000932


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1000932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19795
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F002826Metagenome / Metatranscriptome527Y
F003962Metagenome / Metatranscriptome459Y
F004010Metagenome / Metatranscriptome457Y
F024501Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100093211F001459N/AMRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLASQKLNSAVLGYEDGSDETIAN
Ga0209401_100093221F024501AGAAGGMKHPKQLDEVGITESYLRKMAKKEGLSYKKAVQIAMEQWGEYSLKLINKIVAEDIKTK
Ga0209401_100093224F003962N/AVEAYEGQEGRVLNQDREQLKLANRFISLLQKENAQLHGVLRLLGQLVDDMDANCSFEVFEHQWEGLTDEVNRLSGFFESHQKALQLLHDACPEAFDADEVDES
Ga0209401_100093230F002826AGGMQSEAKARLKWGRDILLTAREKLVVERDRASHGHAIDMIQIITMVDAAALICKEIIEESVDSHSKDK
Ga0209401_100093231F004010AGGAGGMPLGKDVSKNMSELAADNRKKGKERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSG
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