| Basic Information | |
|---|---|
| Taxon OID | 3300027971 Open in IMG/M |
| Scaffold ID | Ga0209401_1000334 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32362 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (82.76%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000166 | Metagenome / Metatranscriptome | 1810 | Y |
| F001097 | Metagenome / Metatranscriptome | 780 | Y |
| F002707 | Metagenome | 535 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209401_100033414 | F000166 | N/A | MSNIPTTEDAQYFAQCVKKWQEVLNLGDWRLEKGLKPAKQAMASVEFNEAARLAVYRLGDFGAEKITHKSLDCTALHELLHVMLHDLLTAAQDPKSSQDDIDKQEHRVINLLERLLKDSNGLA |
| Ga0209401_100033430 | F001097 | AGGAG | MKFEWPINDTRRIRTLQELRSPRVDTQIQQQEIDDWLKQSVALVAGSVRGLGANQRKVRYFAFEGQNDEVTK |
| Ga0209401_100033435 | F002707 | AGG | MTQTEALIECLILALTAPNNKKADQASELAEKIAFGLSVDEIEACKFEALEFVGFE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |