| Basic Information | |
|---|---|
| Taxon OID | 3300027971 Open in IMG/M |
| Scaffold ID | Ga0209401_1000143 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47354 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (76.81%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F002149 | Metagenome / Metatranscriptome | 589 | Y |
| F003112 | Metagenome / Metatranscriptome | 506 | N |
| F068578 | Metagenome / Metatranscriptome | 124 | N |
| F083891 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209401_100014313 | F003112 | N/A | MKRIATWITVLGLRLLLTAKDYACFMEALKCAEDNNRLARGTKYIGAVKHLLSVNRSIKRMVADGRDRDEVVGAVVHLAVSLKYLESRNE |
| Ga0209401_100014330 | F083891 | AGG | MGDTKLERMERMEARMSQSIECPNCKCEVPVALFASRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELPVASFRPIKLD |
| Ga0209401_100014349 | F068578 | GGA | MSTQSIMEAIDSLGTAVRELQEGLPVREHTEPTIEDVATHASTVIRKIMSRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNTSSPDSSGETCIDHLERALVRAVFTLYKAKEGKIH |
| Ga0209401_100014362 | F002149 | GAG | MTAIEYIELSGVPEGMWHNLSDWFNWFEKQGLVGIVRDSDEIVGVALARCLRDGEKPDHYVHHEDGDNIFVDLTISSKGAISLRCLLSLLLERFGIRKSITFNRSGVSRSYDFMKFMRKALR |
| Ga0209401_100014364 | F000635 | GAG | MTLNEIAQFAGEKVGKTDSDTLSFLGKSASINYRRVWNFAPWRETVTNSTYSVSTSTRTITLGSLVENPLSVAYGDSELLSVDLQTIISQDADLLDSDRTGTPTQYYFKGRNTSGTAQIDLYPILNTSSTTVLKVIEKLACVTRSNNTVDFPPSQAALDDELRLPHVMHVVLALTHADALERERQYAKAQAVVSTANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |