NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1000004

Scaffold Ga0209191_1000004


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)260392
Total Scaffold Genes251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)169 (67.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014736Metagenome260Y
F022648Metagenome / Metatranscriptome213Y
F028513Metagenome / Metatranscriptome191Y
F102821Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_1000004144F028513AGGAGMLNQLAGYFQKIFQAFEKPQTYGSALEEYIVRHAPQNTCDVDRLTRQFDLHHAGKGWI
Ga0209191_100000418F014736N/AMNTPIVPDNVVKMWNDPRFEILAEVDRLLTGSKTWAGMEYTYHPIHPDKYKPVAVKVRKALYDLQAEYGVLE
Ga0209191_1000004234F102821N/AMIVRLANKIGQAHGKFFMWLGQKAESNPWWAVALTVWALYEIGEHIAGPVMAVLYATGHMTFN
Ga0209191_1000004249F022648N/AMNSNKQEHMMAIVHNVQIYPIYAFHVNDHKVLGEEEFDTREDALMWVESYNRHRDVWNINGWLEEGNGVVAVYTGAIDDETGENL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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