NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209272_10292043

Scaffold Ga0209272_10292043


Overview

Basic Information
Taxon OID3300027967 Open in IMG/M
Scaffold IDGa0209272_10292043 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010473Metagenome / Metatranscriptome303Y
F019630Metagenome / Metatranscriptome228N

Sequences

Protein IDFamilyRBSSequence
Ga0209272_102920432F010473N/AMNLIRYEFKAGFFKGFLFGVRHYPFDDEEIYEEDIVLYIGIFQIILTLIYEK
Ga0209272_102920433F019630AGGAGMPKIKKKIVLKNCNYQHQQYCFKKGFIIYPVVSGKMFKVYCNRIKGNYYMKGREFNKQESFQAIWDLYTKIYKYEFNKVRV

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