NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1002045

Scaffold Ga0209400_1002045


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002045 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15592
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003379Metagenome / Metatranscriptome490Y
F008357Metagenome / Metatranscriptome334Y
F010085Metagenome / Metatranscriptome308Y
F080026Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100204510F008357AGGAGMSAQKNFEIDQNTTFSFIVEYKDNAGLPIALTSASAKMQVRDTKGGSKLAFTLSSPTSGIVIDQPAGKLTVTMSQAQTNNLFYPKSSYDIMVTDSNGNRTKLLEGYITLSRSVTI
Ga0209400_100204515F010085AGTAGGMQIQYVSKYIALSQEGLVPRLECPMDQGSLQSNLDLEDNIYLYCLSCDYKNNIGLEVYTRIVKLVNNEI
Ga0209400_100204519F080026AGGAMAYSQEQMEFAHKIVFRLMEILKVCPNVDDKYKCHTTHQPAHKRCVDIMVLLAEITNLPEYLVYLANNNETNKDPYGWIVAYPPAEAIVVEESNNTEKAVDLE
Ga0209400_100204521F003379N/AMKKISALIMLIATAILSGAALNKFLNWAGKQEDFFDFDLDEDIDNEQF
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Institute for Fundamental Biomedical Research
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