NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000560

Scaffold Ga0209400_1000560


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000560 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32286
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023293Metagenome210Y
F032573Metagenome179Y
F043751Metagenome155Y
F055425Metagenome / Metatranscriptome138N
F057197Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100056015F055425N/AMITNDEKLASAIMNAYYREMEIYAYQVNIDNYSAMLLALPSGDWPVDWVAFKGVKIEELPHSLSEDDVQAISDYQYRDRLRSLVRTEKAEQSKCNRIRDVLKAQIGGDYDALVLAYKAAQ
Ga0209400_100056026F057197AGGAMTDFATWRYENLVKFAVEANQRLALLNAEIDALNADLKAAINAYRDLLRRDAPGLLETSHTAETKQAGE
Ga0209400_100056028F023293N/AMKYGILDDEGNVVRWVWHMPPYPHIVERIKRKRKPKLDLSNVPDALF
Ga0209400_100056029F043751GGAGGMKYCWPKKLYYVCCRWIEYPKGGGRNFIATKHLGRARYYAKRLKLKMRQIDVRVRGKKPYVLKDSWL
Ga0209400_100056030F032573AGGMNKAEAWRKWWSVIHKTIPAGSYDPREAFMWEAWEAAWEEANKQSQVEITHLKEQLLRSNTNDGAYKAAFLAGQMAARGGSWK
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