| Basic Information | |
|---|---|
| Taxon OID | 3300027956 Open in IMG/M |
| Scaffold ID | Ga0209820_1023465 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1584 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | near Jamestown, North Dakota | |||||||
| Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001326 | Metagenome / Metatranscriptome | 721 | Y |
| F002302 | Metagenome | 573 | Y |
| F034841 | Metagenome / Metatranscriptome | 173 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209820_10234651 | F002302 | N/A | MSYTDLFNEAIDDVTATLTAVTGLRVINDATKLVANSVYLDAPNFTTIAGNGNVVRLEFPVKVIGSGPAGLPVLRQILSIAATVLGSKIIVMGGRPSSLEIGGALYPCYDLDCAIQAQTS |
| Ga0209820_10234652 | F001326 | AGG | MATYSVTNKYLIDNYAVLQLLTPSEIAVGQSITVAGVDATFNGTYTVRALPQYLYIGVDSQGDLLYDYQLPIADQVLFAKTADDVERTAASGTVTYAPVCTWVTASDVMTYLGITIANPSDDYTLLTQSVSAGCQFAFRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA |
| Ga0209820_10234653 | F034841 | N/A | TYNNTDPSTLFAALYDAATDILTASNFLPDHIFVSPNVWKLLGQQMDGENRSVFPYAGAAGLMGVNAAGTANITQLNTFNPFGLNLVADRNFATNTMVVAKASAIEFYEQVRGLMSVEAPSTLGRVFSYYGYVATFIADSDLVKSITVSP |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |