NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100080854

Scaffold Ga0209536_100080854


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100080854 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4168
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022895Metagenome / Metatranscriptome212N
F076145Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1000808545F022895N/AMAANLSLAAVAGSNCPRTAGVKELYTIPVADVSSITLGSDHDITNIVFATAGTGFGKINFKRGECEVTEAMERSNQVEVNFAVANPTSTQRKELQAIKDSCEQYMVARLYDGDRLLFIGYDEEFGDEAFAAFMSAESTSGRAKADDNLFSFTMMAEQGEFLRVLSGISGASTPATTVPAIVAELVAATSV
Ga0209536_1000808546F076145N/AVQKRIKNHPRKSHQTSFQVTNNVIQLPDYTDKQKIVTKQGLRIVSTVDNNLFPQKVSKLAKESSTLKAVINSFAEYVSYGALLTENMQLERKLTKDLNKYYNWFELAKRVAKDRRTYGYGFIEAIRKGSEVFVYHLDASQVRFMEYFGEKPEAVAISKDWNDTRIRPIERTLYPNYDEDGRTIIPIMEYESGMIDYPLPMWSGAFFDAQVESLIGQYNANQFENGVTLSSILMFDFGDTTDANGDAEKGLARQKQKLESQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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