| Basic Information | |
|---|---|
| Taxon OID | 3300027911 Open in IMG/M |
| Scaffold ID | Ga0209698_10001708 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25341 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (53.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Clearfield County | |||||||
| Coordinates | Lat. (o) | 41.170727 | Long. (o) | -78.4726 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036462 | Metagenome / Metatranscriptome | 170 | Y |
| F038776 | Metagenome / Metatranscriptome | 165 | Y |
| F042607 | Metagenome | 158 | Y |
| F071164 | Metagenome | 122 | Y |
| F094469 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209698_1000170813 | F042607 | AGGTGG | MSIRIIDNKKVDLTEEEWSLYQKIVKSYTTTTNKGEDLFIDLFESNDQGILVFLKPPSKRHTSLEIFLFLMSIFQHQHLRLMHDRVSDIKQQMIDKLKEIEDKLSQLNDKKENK |
| Ga0209698_1000170814 | F036462 | AGGA | MSQQVRLGDLLGSNPIEDFKSFDLTEVQKVLSQLRDTDAIDLAHAELLQQQALRGADILSEYLAKMVKTVSYLEAKVNSIKNKVSLEYVAPDGSRTTTDMKIWAGNASSEVEAITNSLAEAKGAKIALEKKFDIMIKTHHHYKDLAMGFKRTILGSSISNKGSEILPGYE |
| Ga0209698_1000170824 | F038776 | GGAG | MSKFNLDYLGLAKQITKKAYKLADVKDQLESVGFDIVRFKNSDKSAELWQVQNADDGDYIVALYDDSDELEKTANPWNVLVSHGGNDLQISYKGDPLVRLAAAKLGIPNNELHKAEQYLPEKLANNKKLVKALLNELSEVARHEISRRYPELV |
| Ga0209698_1000170827 | F071164 | AGGA | MRIAELLNAMAAWLASPNNEAMLLAQEDEDCMKIVAQSCVLAAELLKNAAEEVDVLEPQADSVITPESVEATAALATAFDASNDPELKKIASVLDELLLTIAAPPNALAQKKQADFNRIEELRKKYQQPGETLKDYNKIGVSEKALQKSKYSKEYKINDQPLSSRSCPDHPGAQIARVGEHVWQCELDKKVYNYETGFTLDNGEKVPGGDVSLQTPGSNIPFHSIFDTRDGRLNSNK |
| Ga0209698_1000170828 | F094469 | N/A | MSKNATLKKILDHPDQQEIIAKLVLDYAAKDIHEWLAGKYTAVSESKLVLSEKAIKTFKDNYLDVYNMIQDDIKKTKQAIATNTEAELQLAISNNPTYKGKMLELAGKEIDIRQMIRNLAMAIETRLGQIFDEIQEDPRNINTRVDRVLIEYAELLGSLLEKYYKLTENSADQVVQHNITLQVVDQHISVFHDVIKEILSSLDLESSMLFMELFNQKMAKLKTPVPEQFPNTDLRLAEAKVLNETINQKLNN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |